Table S3. SAGE tag levels for previously identified photoreceptor-enriched genes This is a full list of all confirmed photoreceptor-enriched genes in the mouse for which a predicted SAGE tag could be obtained. Tag totals have been normalized to 55,000.  Abbreviations are as follows: hypo=hypothalamus, E12.5=embryonic day 12.5 whole retina, P0.5=postnatal day 0.5 whole retina, adult=adult whole retina, ONL=microdissected adult outer nuclear layer.   Crx was not considered because it is represented by an ambiguous tag (GAAAAAAAAA).
	3t3	hypo	e12.5	e14.5	e16.5	e18.5	p0.5	p2.5	p4.5	p6.5	P10.5 crx-/-	P10.5 crx+/+	adult	ONL
rhodopsin	0.0	3.0	0.0	2.0	1.0	0.0	3.2	1.9	8.0	53.2	48.0	388.1	1113.1	1339.0
rod arrestin	0.0	1.0	0.0	0.0	3.0	2.2	7.6	14.5	41.0	157.7	127.7	637.6	359.5	411.9
phosducin	0.0	0.0	0.0	0.0	2.0	0.0	1.1	6.8	12.0	54.1	51.1	62.4	55.0	241.3
G a1	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	26.4	245.4	210.7
rod PDE g	0.0	0.0	0.0	0.0	1.0	1.1	1.1	2.9	9.0	50.4	19.4	136.4	173.1	209.6
ROM1	0.0	0.0	0.0	0.0	0.0	1.1	3.2	4.8	8.0	45.8	13.3	30.7	155.8	155.9
G g 1	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	7.3	7.2	27.5	62.1	121.2
mUNC119	2.0	1.0	0.0	1.0	3.0	1.1	8.6	6.8	11.0	26.6	39.8	13.7	115.1	106.4
G b1	13.5	12.0	8.3	5.0	4.0	8.6	8.6	7.7	11.0	26.6	19.4	55.0	73.3	99.0
GCAP 1	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	5.1	8.5	63.1	95.9
rod PDE b	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	8.0	25.7	31.7	67.7	102.9	95.9
prominin	0.0	1.8	5.6	9.1	10.9	13.7	9.8	21.1	45.5	85.0	37.2	69.2	42.6	90.0
GCAP 2	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	31.6	54.8
peripherin 2	0.0	0.0	0.0	0.0	0.0	0.0	2.2	1.9	2.0	8.3	6.1	7.4	99.8	52.7
AILP1	0.0	0.0	0.0	1.0	0.0	2.2	1.1	1.0	6.0	11.9	3.1	20.1	38.7	51.6
PHR1	0.0	59.0	0.0	1.0	4.0	6.5	1.1	11.6	19.0	65.1	25.5	118.4	72.3	49.5
Tulp1	0.0	0.0	0.0	1.0	0.0	3.2	3.2	1.0	7.0	22.0	13.3	19.0	47.9	44.2
Xlrs1	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	7.3	0.0	14.8	50.9	41.1
recoverin	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	4.6	0.0	11.6	39.7	37.9
rod CNGC b	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	11.9	9.2	21.1	29.5	30.6
Nrl	0.0	0.0	0.0	0.0	0.0	0.0	1.1	5.8	11.0	54.1	11.2	27.5	72.3	29.5
blue cone pigment	0.0	0.0	0.0	0.0	0.0	1.1	0.0	1.9	0.0	2.8	0.0	8.5	7.1	25.3
Elov4	0.0	1.8	1.9	1.8	1.8	3.9	7.9	10.6	9.1	16.7	9.3	19.2	27.8	23.0
cone PDE g	0.0	0.0	0.0	0.0	0.0	0.0	2.0	1.8	7.3	3.3	0.0	7.7	9.3	19.2
G b 3	0.0	2.0	1.0	8.0	7.0	9.7	10.8	18.4	19.0	32.1	38.8	28.5	21.4	15.8
green cone pigment	0.0	0.0	0.0	1.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	4.2	16.3	14.7
PNR	0.0	0.0	0.0	1.0	0.0	0.0	0.0	19.4	42.0	66.0	19.4	42.3	19.3	14.7
cone transducin	0.0	0.0	0.0	0.0	6.0	1.1	1.1	0.0	0.0	3.7	4.1	4.2	13.2	13.7
RGPRIP	0.0	1.0	1.0	1.0	3.0	3.2	3.2	13.6	22.0	26.6	8.2	44.4	10.2	12.6
CACN1AF	0.0	0.0	0.0	0.0	0.0	0.0	3.2	1.0	3.0	8.3	5.1	7.4	8.2	12.6
retGC-1	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.9	1.0	2.1	6.1	11.6
RP1	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	1.0	1.8	7.2	2.1	10.2	10.5
c-mer	0.0	1.8	0.0	14.6	0.0	2.0	3.9	1.8	0.0	1.7	0.0	1.9	3.7	9.6
rod CNGC a	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	2.8	2.0	6.3	22.4	9.5
IRBP	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	4.6	26.6	11.6	2.0	8.4
G b 5	0.0	1.0	0.0	0.0	0.0	0.0	1.1	0.0	2.0	0.9	0.0	1.1	3.1	8.4
RAN binding protein 2	0.0	1.0	8.2	4.0	1.0	5.4	0.0	5.8	5.0	5.5	1.0	7.4	7.1	6.3
ABCR1	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.1	7.1	4.2
cone CNGC a	0.0	2.0	1.0	1.0	0.0	0.0	2.2	1.0	0.0	1.8	0.0	1.1	3.1	3.2
retinal short-chain dehydrogenase/reductase 1	0.0	0.0	0.0	0.0	0.0	0.0	0.0	1.0	0.0	0.0	1.0	1.1	2.0	2.1
cone CNGC b	0.0	0.0	0.0	0.0	1.0	4.3	1.1	1.9	6.0	0.9	3.1	1.1	0.0	2.1
rod PDE a	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	4.1	0.0
rhodopsin kinase	0.0	0.0	0.0	0.0	0.0	0.0	2.2	0.0	0.0	0.0	2.0	0.0	0.0	0.0