| Table S15
List of mouse probes used for in situ hybridization This chart shows the Unigene number and identity of the newly characterized confirmed photoreceptor-enriched transcripts and the accession number of the EST used as an in situ probe. Entries listing PCR represent probes generated by PCR. The PCR primers and product size representing these Unigene clusters that were obtained by PCR are shown below the list of EST probes. |
|||
| Gene | Mouse probe | ||
| 10085 nuclear factor of activated T-cells, cytoplasmic 1 | BE633324 | ||
| 100975 ESTs | BF551899 | ||
| 101118 Ras negative regulator Rabex-5/Rin2 | BE305992 | ||
| 101476 ESTs/40838 Na-dependent inorganic phosphate cotransporter/VGLUT-1 | AI851913 | ||
| 101833 ESTs/galectin 8 | AW211925 | ||
| 102470 ESTs | BF470003 | ||
| 102679 ESTs | BF522350 | ||
| 10301 phosphatidylinositol 3-kinase, C2 domain containing, gamma polypeptide | AA967810 | ||
| 103712 ESTs/protein of unknown function | PCR | ||
| 10780 similar to oligosacharyltransferase STT3 subunit | BE647490 | ||
| 111887 ESTs/protein of unknown function | BE457506 | ||
| 116683 ESTs/A20? | BE849027 | ||
| 11678 ESTs | AA437956 | ||
| 117008 ZNF262 | BF022967 | ||
| 117022 AF180470/novel glycosyltransferase | BF719112 | ||
| 12019 ESTs/Na-K ATPase beta 2 subunit | AI845260 | ||
| 12055 inositol polyphosphate multikinase | BG147431 | ||
| 122067 ESTs | PCR | ||
| 122087 ESTs | BF449937 | ||
| 125811 ESTs | PCR | ||
| 128183 KIAA0863/homeodomain transcription factor | BF158746 | ||
| 12914 Mus musculus ubiquitin-specific protease UBP41 (Ubp41) | AI846522 | ||
| 130902 ESTs/152519 proline-rich protein | AA616812 | ||
| 131592 ESTs | BE686333 | ||
| 131653 musashi-1 | PCR | ||
| 131710 ESTs | BF465573 | ||
| 133032 ESTs | AI662834 | ||
| 133521 ESTs/zinc finger homeodomain 4 | BF147593 | ||
| 133603 ESTs/protocadherin gamma C4 | PCR | ||
| 133635 ESTs | PCR | ||
| 133687 ESTs/similar to OATP-E | AA473599 | ||
| 133990 ESTs/nuclear protein | BE647993 | ||
| 134304 ESTs | PCR | ||
| 136988 ESTs/novel K channel? | BF523810 | ||
| 138316 ESTs | PCR | ||
| 138550 ESTs | PCR | ||
| 139204 ESTs/MHC E-beta 2 | BF662424 | ||
| 140496 Fanconi anemia complementation group E homolog | BE285331 | ||
| 14099 hematopoetic zinc finger | AI415698 | ||
| 143811 Mus musculus BETA3 mRNA, complete cds | BB394098 | ||
| 143816 poly(rC)-binding protein 3 | AW048741 | ||
| 150221 EST | PCR | ||
| 150542 ESTs | BE949265 | ||
| 150554 EST | BF470793 | ||
| 151012 ESTs | AW125320 | ||
| 151536 ESTs | PCR | ||
| 152323 ESTs/DRIM | BF472544 | ||
| 152952 ESTs | BE985995 | ||
| 1532 ESTs/PP1665 | AI112541 | ||
| 153891 ESTs/protein phosphatase 4a3 | BG276478 | ||
| 153895 ESTs | BE633094 | ||
| 154489 ESTs, Moderately similar to AF094609_1 fertility related protein WMP1 [R.nor | BE369401 | ||
| 1640 cerebellar degeneration-related 2 | AA673164 | ||
| 1693 high mobility group box 2 | AW046897 | ||
| 17613 ESTs/probable SNK/polo-like kinase | AW048815 | ||
| 17804 ESTs/mCTR2 | BE851825 | ||
| 182462 ESTs | AW533667 | ||
| 183018 ESTs | AI851309 | ||
| 1843 heat shock 90kD protein 1, alpha | AI839932 | ||
| 18499 ESTs | BF662402 | ||
| 18516 H3 histone, family 3B | AI841334 | ||
| 18522 carnitine palmitoyltransferase 1, liver | AI846647 | ||
| 186013 EST | PCR | ||
| 19077 ESTs/KIAA1351 rac GTPase related | AI550313 | ||
| 1915 ESTs | AI843358 | ||
| 1921 ESTs, Moderately similar to KIAA0826 protein [H.sapiens] | AI836821 | ||
| 193093 PKAbeta | AW496459 | ||
| 196081 novel cylophilin/high retinal expression | AW122135 | ||
| 2003 mdm-1 nuclear protein | AW321423 | ||
| 200894 ESTs/KIAA0306 (cytoskeletal) | AI850859 | ||
| 2032 interferon dependent positive acting transcription factor 3 gamma | BF660863 | ||
| 20872 like-glycosyltransferase | AI838557 | ||
| 21383 ESTs/CGI-145 | AI841275 | ||
| 21389 type II deiodinase | AI852512 | ||
| 21470 ESTs/similar to UDP-galactose transporter-related protein | AI842275 | ||
| 21761 ESTs, Moderately similar to A56391 lamina associated polypeptide 1C long sp | AI853475 | ||
| 22085 Mus musculus ADP-ribosylation factor-like protein 3 (Arl3) mRNA, complete cd | AI892178 | ||
| 22314 ATP-binding cassette, sub-family A (ABC1), member 3 | AA717342 | ||
| 22358 ESTs, Weakly similar to TFSL_MOUSE TRANSCRIPTION FACTOR S-II-RELA | AI846500 | ||
| 2240 similar to succinate dehydrogenase flavoprotein | AW323348 | ||
| 22440 TRAP150 | AI836625 | ||
| 22682 ESTs, Moderately similar to PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KI | AI851871 | ||
| 22758 ESTs/potential steriod isomerase | AI852782 | ||
| 23195 ESTs, Weakly similar to KIAA0377 [H.sapiens] | AI450926 | ||
| 23494 ESTs/KIAA0931 | BE303825 | ||
| 23739 XAB2/HCNP | AI851650 | ||
| 23843 ESTs/novel lectin binding protein | AI842077 | ||
| 2389 myeloid/lymphoid or mixed-lineage leukemia | AA118875 | ||
| 2395 male enhanced antigen 1 | AI414814 | ||
| 23971 dsRNA adenosine deaminase | AI842795 | ||
| 2400 glutathione peroxidase 4 | AI850040 | ||
| 24009 ESTs | BE633326 | ||
| 24014 ESTs/similar to KIAA1052 | AI450905 | ||
| 24117 ESTs, Moderately similar to unnamed protein product [H.sapiens] | BE309729 | ||
| 24149 ESTs/contains G beta repeats | BG092839 | ||
| 24300 leucine zipper transcription factor | AI666705 | ||
| 24309 ESTs/harmartin (tuberous sclerosis 1) | AI837319 | ||
| 24430 unc5 homolog (C. elegans) 3 | AA387900 | ||
| 24514 ESTs/rheb2 | AW048908 | ||
| 24594 mitochondrial uncoupling protein 1 | AI852122 | ||
| 25298 signal transducer and activator of transcription 3 interacting protein 1 | AI849238 | ||
| 25695 ESTs/bicaudal C (RNA bp) | AI852358 | ||
| 25715 KIAA0853 | AW492537 | ||
| 26579 ESTs | AW495527 | ||
| 2672 mannoside acetylglucosaminyltransferase 1 | AI840067 | ||
| 26828 ESTs/erb2-interacting protein ERBIN | AI843677 | ||
| 27013 ESTs/voltage-dependent calcium channel beta-2c | AW060387 | ||
| 27029 ESTs | AI552778 | ||
| 27033 DNA segment, Chr 15, ERATO Doi 81, expressed | AI847650 | ||
| 27057 ESTs | AI007199 | ||
| 27232 ESTs/novel Zn finger protein | BE852251 | ||
| 27256 discs large homolog 4 | AI450221 | ||
| 27325 ESTs | AI838908 | ||
| 27359 ESTs/nephronopthisis protein | BE649996 | ||
| 27359 monocarboxylate transporter 6 | BE848456 | ||
| 27496 ubiquitin specific protease 1 | AI848382 | ||
| 27583 ESTs, Weakly similar to ZK1058.5 [C.elegans]/methyltransferase | AW519571 | ||
| 27673 ESTs/osteoblast protein/novel glycosyltransferase | AI841826 | ||
| 27698 ESTs/KIAA0140 homolog (putative nuclear protein) | AI467602 | ||
| 27728 ESTs | AI845850 | ||
| 27802 thymic dendritic cell derived factor | AI846235 | ||
| 28005 BBS2 | AI851478 | ||
| 28147 ESTs, Moderately similar to POLYPOSIS LOCUS PROTEIN 1 [Homo sapiens | AA914367 | ||
| 28209 Mus musculus p53 apoptosis-associated target (Perp) mRNA/tetraspanin | AI854029 | ||
| 28405 serum/glucocorticoid regulated kinase/hypertonicity activated | AI854349 | ||
| 28482 novel metalloprotease | AI836224 | ||
| 28526 ESTs /KIAA0321 FYVE Zn fingers+weak similarity to hrs-2 | AA967609 | ||
| 28542 ESTs, Weakly similar to similar to S. cerevisiae hypothetical protein YKL166 [C.elegans] | AI852060 | ||
| 28654 ESTs, Weakly similar to CG8195 gene product [D.melanogaster] | BE308346 | ||
| 28896 phosphatidylcholine transfer protein-like | AI849800 | ||
| 28914 ESTs | AI430543 | ||
| 29001 ESTs, Highly similar to URACIL PHOSPHORIBOSYLTRANSFERASE [Sacch | AI851238 | ||
| 29055 chromobox HP1 | BE851851 | ||
| 29308 protein L-isoaspartate-O-methyltransferase homolog | BE447981 | ||
| 29356 ESTs/isoprenylcyteine carboxylmethyltransferase | AW494010 | ||
| 29385 protein phosphatase 1, regulatory subunit 10 | AW488180 | ||
| 29477 peroxisome proliferative activated receptor, gamma, coactivator 2 | BE852933 | ||
| 29579 ESTs | AI836856 | ||
| 29730 four jointed box 1 | AI465262 | ||
| 29762 taurine/beta-alanine transporter | AI326802 | ||
| 29794 Y box bp 3 | AI843687 | ||
| 29912 ESTs, Moderately similar to molybdopterin synthase sulfurylase [H.sapiens] | AI839519 | ||
| 30007 Mus musculus muscleblind mRNA, complete cds | AI854176 | ||
| 30038 erythrocyte protein band 4.1 | AI840295 | ||
| 30058 amino acid transporter protein NAT-1/histidine+glutamine | AI839742 | ||
| 30069 Tax1BP/interacts with A20 | AI843287 | ||
| 30200 ESTs, Highly similar to ELECTRON TRANSFER FLAVOPROTEIN BETA-SUB | AI848359 | ||
| 30556 ESTs | AI463445 | ||
| 30688 ESTs/CMV fusion receptor | AI450970 | ||
| 30829 ESTs/cyclin D-binding myb-like transcription factor | AI448589 | ||
| 30870 ESTs | AI481947 | ||
| 30911 ESTs | AI552264 | ||
| 30935 ESTs, Highly similar to tudor repeat associator with PCTAIRE 2 [R.norvegicus] | AI447470 | ||
| 31161 ESTs | AI480988 | ||
| 31170 cyclin K -- Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-termi | AI463252 | ||
| 31514 ESTs, Moderately similar to cell growth regulator rCGR19 [R.norvegicus] | AI462472 | ||
| 32382 Interferon regulatory factor 6 | BE691484 | ||
| 32416 ESTs/novel glycosyltransferase | AI451145 | ||
| 33118 ESTs/novel rdgB2 homolog | AI848332 | ||
| 33583 single-strand selective uracil gycosylase (SMUG1) | AW050366 | ||
| 33875 torsin family 2, member A | AI843178 | ||
| 33915 ESTs | AI613936 | ||
| 33944 ESTs/splicing? | BE291765 | ||
| 340 high-mobility group protein 4 | AI853499 | ||
| 34125 ESTs | AW519622 | ||
| 34200 Syntaxin 3A | BF318336 | ||
| 34308 ESTs | AI837275 | ||
| 34326 ESTs/Zn finger | AI845904 | ||
| 34704 interleukin 15 receptor, alpha chain | BE627836 | ||
| 34855 ESTs | BE686752 | ||
| 34885 ESTs/Abeta crystallin-related/small HSP-like | AI852989 | ||
| 35016 histocompatibility 2, T region locus 23 | BF021004 | ||
| 35060 ESTs/novel IAP | AI020489 | ||
| 35108 ESTs/similar to D. unkempt zinc finger protein | AI853158 | ||
| 35159 ESTs | AI853191 | ||
| 35848 male germ-cell associated kinase | AW495430 | ||
| 36292 ESTs/ubiquitin hydrolyzing enzyme 1 | BE200409 | ||
| 36545 ESTs/esterase 10 | AI839908 | ||
| 3667 vitronectin | AI854511 | ||
| 36894 transcription factor 12/HTF4 | AI850155 | ||
| 37607 ESTs | AI846073 | ||
| 38058 ESTs | AI840103 | ||
| 38381 ESTs, Weakly similar to DHBK_MOUSE PUTATIVE STEROID DEHYDROGE | AW124838 | ||
| 38763 ESTs/IMP dehydrogenase 1 | AI848836 | ||
| 3879 hypoxia inducible factor 1, alpha subunit | BE955791 | ||
| 38890 ESTs/Daxx | AI842442 | ||
| 38993 ESTs/calsyntenin 1 | AI837092 | ||
| 39097 ESTs | AI851319 | ||
| 39513 ESTs/KCNMA1 calcium-activated potassium channel | AI835710 | ||
| 39855 ESTs/novel sialyltransferase | AI846736 | ||
| 39888 ESTs/KIAA0735 SV2B | AW045524 | ||
| 40297 ESTs/Kv2.1 potassium channel | AI852064 | ||
| 4063 N-myc downstream regulated 1 | AI852317 | ||
| 40727 ESTs/novel cadherin | AI852446 | ||
| 40852 ESTs | AI847159 | ||
| 41269 ESTs/lysophosphatidic acid acyltransferase-gamma1 | AI839508 | ||
| 41271 ESTs/similar to phosphotidylcholine transfer protein | AI852671 | ||
| 41350 ESTs/TED homolog/CAG repeat | AI835545 | ||
| 41406 ESTs, Highly similar to KIAA0913 protein [H.sapiens] | AI853865 | ||
| 41489 protein of unknown function | BF472300 | ||
| 41649 ESTs/KIAA0515 ubiquitin-like motif? | AI853997 | ||
| 41702 Sox11 | AI835269 | ||
| 41744 ESTs/KIAA0795 | AI849443 | ||
| 41776 otoconin 90/phospholipase A2-like | AI894211 | ||
| 41860 ESTs, Weakly similar to collagen type XIV [M.musculus] | AI838662 | ||
| 41877 ESTs, Weakly similar to mCAC [M.musculus] | AI853021 | ||
| 43603 carboxypeptidase E | BE686085 | ||
| 43731 KIAA1134 | BF160911 | ||
| 43737 M.musculus mRNA for casein kinase I-alpha | AI847674 | ||
| 44123 Similar to hypothetical protein FLJ20186/DAG binding motif/4 LZ/TNFR C-rich motif | AI847127 | ||
| 44702 ESTs | AW050046 | ||
| 4471 ESTs/v. weak similarity to prominin? | AI838217 | ||
| 44868 ESTs/novel protein kinase | AW047494 | ||
| 45160 ESTs | AW049253 | ||
| 45192 ESTs/KCNE2 minK-type K-channel MiRP1 | AW048273 | ||
| 45194 ESTs, Moderately similar to unnamed protein product [H.sapiens] | BE686297 | ||
| 45237 ESTs, Highly similar to atypical PKC specific binding protein [Rnorvegicus] | BE988459 | ||
| 45390 ESTs | BF522350 | ||
| 45565 ESTs/Dyrk2 | AI764532 | ||
| 45994 tetraspan 1 | AI643349 | ||
| 46019 ESTs | AI842852 | ||
| 46489 ESTs/chondroitin 4-sulfotransferase paralog | AW742878 | ||
| 46606 ESTs, Moderately similar to SECIS binding protein 2 [R.norvegicus] | AI837465 | ||
| 46628 vascular endothelial zinc finger 1 | AI642684 | ||
| 46764 phosphitidate cytidyltransferase | AI413216 | ||
| 46776 ESTs | BG148691 | ||
| 46786 tctex-1 | BE630930 | ||
| 47052 similar to testis lipid binding protein | BE982430 | ||
| 4881 granin-like neuroendocrine peptide precursor | AI848336 | ||
| 5185 ESTs | PCR | ||
| 54359 Mus musculus APRIL mRNA, complete cds | BE631332 | ||
| 54993 novel PI PDE | BF168813 | ||
| 56990 excision repair 2 | BE691611 | ||
| 57052 GTP-rho binding protein 1 | AW210837 | ||
| 5856 Mus musculus BS4 peptide mRNA, complete cds | AI844804 | ||
| 63232 ESTs/PR domain containing 8 | AI414839 | ||
| 6667 single-strand DNA binding protein 3 | AI854882 | ||
| 68134 ESTs | AW494810 | ||
| 68170 Kir2.4 | BF543309 | ||
| 69023 ESTs, Weakly similar to KIAA1537 protein [H.sapi/FYVE Zn finger | AA754980 | ||
| 69049 Mus musculus hypothetical protein mRNA, partial cds/similar to RAD4 | AI854095 | ||
| 695 abl-interactor 1 | AI840745 | ||
| 70121 ESTs/novel CaBP | BE119125 | ||
| 71015 protein disulfide isomerase related protein | BE456289 | ||
| 732 dolichyl-phosphate mannosyltransferase polypeptide 3 | BF470038 | ||
| 7331 pre B-cell leukemia transcription factor 3 | AI415655 | ||
| 74737 ESTs/SOD3 | AW060724 | ||
| 7919 hrs-2 Zn finger SNAP-25 interacting ATPase | AI844038 | ||
| 80063 ESTs | BE106620 | ||
| 80685 microfibril associated glycoprotein | AI430252 | ||
| 814 DNA segment, Chr 10, ERATO Doi 398, expressed/4.1G | AI845287 | ||
| 81416 novel retinol dehydrogenase/CGI-82 | AA821382 | ||
| 8180 Ly6C | BF453976 | ||
| 86457 ESTs/novel protein kinase | BF179218 | ||
| 87450 oxysterol binding protein | BE647854 | ||
| 87653 ESTs/novel Zn finger | AA024316 | ||
| 89136 H3 histone, family 3A | AW260090 | ||
| 89584 inositol hexakisphosphate kinase 2 | BF163467 | ||
| 9001 nemo like kinase | AI849001 | ||
| 90048 estrogen related receptor beta 2 | AA589656 | ||
| 90390 ESTs/novel PI kinase | AW495463 | ||
| 9086 solute carrier family 16 (monocarboxylic acid transporters), member 1 | AI854532 | ||
| 911 high mobility group protein 17 | AI836705 | ||
| 95741 ESTs/Zn finger transcription factor | AW825066 | ||
| 9838 ESTs | AI840910 | ||
| PCR primers used to obtain probes | |||
| Gene | 5'primer used | 3'primer used | Product size |
| 133635 ESTs | GCGCGGCCGCGTGGTCCTGGGTTTTATTAT | GGGATCCGAAGTTATCAGAAGGGAAGAA | 297 |
| 134304 ESTs | GCGCGGCCGCCTTTTTCTAGATGCAGAGACTTTA | GGGATCCAGGTTTAATTCTTTTTCCTTGAA | 305 |
| 138316 ESTs | GCGCGGCCGCACCTTGACACATGTTATCTACCAGCA | GGGATCCCATGCAGGTATTAGTGTGGGTTTAGAC | 384 |
| 151536 ESTs | GCGCGGCCGCAATGGGAATTTTGAAGAAGTACAGCC | GGGATCCTTTAAGGGCACAAAGGATACCTTAAGA | 348 |
| 152952 ESTs | GCGCGGCCGCGCTTTCCCTTGCTTTAGGACGA | GGGATCCCACCAGGTCCCAAGTCCCTAA | 405 |
| 5185 ESTs | GCGCGGCCGCTAAATCTCGCTCAGGATGTAGGTCC | GGGATCCTTGGGTCCTGGACCAAGACAT | 260 |
| 138550 ESTs | GCGCGGCCGCTTATGGCAATGTAACAGATGCCG | GGGATCCGAGTCCATGTTTCTCAAAAACACCA | 258 |
| 150221 EST | GCGCGGCCGCTTTTTTCAGTACCTGGGAATTAACCC | GGGATCCAACATGCTGTAGGAAGCCCGT | 392 |
| 131653 musashi-1 | GCGCGGCCGCGCACCGAGGAGCCAATG | GGGATCCGTGTTCTTTAAAGAGGTGGGTAAC | 283 |
| 125811 ESTs | GCGCGGCCGCCGGCTCGGAGTTACAGATGGT | GGGATCCAGATGGGCCGGGTCACTTAC | 251 |
| 186013 EST | GCGCGGCCGCGAGACCTTATCCCTTCACAC | GGGATCCTTATCACATTATCGCAAACAT | 294 |
| 133603 ESTs/protocadherin gamma C4 | GCGCGGCCGCACACCAGACAACATGAGACAAAAG | GGGATCCGCTCAACCCTATAGATCAGAACTC | 338 |
| 103712 ESTs/protein of unknown function | GCGCGGCCGCGCGGCTGCAGTTGGAGGATGTATG | GGGATCCTATGTGGGCCTTGTGTCTGTGTCA | 609 |
| 47052 similar to testis lipid binding protein | GCGCGGCCGCCCTACTTGGGAGTTTTATTCGAACAAC | GGGATCCCAAAAGCAGGGGTACAGTGATCTTAG | 257 |